To test why a few plugins where not working I had created a new folder and moved 95% of my plugins into that folder named: plugins-null. Well after I visited my site admin and figured out it wasn't any of my other plugins effecting the issues I went in and used the new folder named plugins-null and just changed its name to plugins and deleted the old plugin folder. Well when I visited my admin area again all of my plugins were there but none were activated. I have a multisite with 89 plugins I would hate to have to reactivate them all.
Am I missing something? Any ideas where I went wrong?