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Git is a popular, open-source distributed version control system (DVCS). It can be used to track and revert changes to a code base like a theme or plugin.

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5 answers
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How should I structure a WP website project using git and updating from WP dashboard?

(git repo added as subtree) | | | +-- other-plugin-without-git-repo (ignored/untracked) | | |-- themes | | | |-- my-custom-theme (git repo added as subtree) | | | |-- … other-theme-with-git-repo (git repo added as subtree) | | | +-- other-theme-without-git-repo (ignored/untracked) | | +-- uploads (ignored/untracked) | |-- wp-admin | +-- wp-includes …