I noticed in Google Search Console that pages are increasingly getting removed from the index due to their canonical. For some reason — it points to the home page for some articles.

After some digging, I found out that the canonical is essentially derived from the permalink stored in the wp_yoast_indexable table. It's this line from the plugin's source:

    public function find_by_id_and_type( $object_id, $object_type, $auto_create = true ) {
        $indexable = $this->query()
            ->where( 'object_id', $object_id )
            ->where( 'object_type', $object_type )
        // ...

It pulls out the object from the database and if I run execute $indexable->permalink, I get "/".

I opened the table in phpMyAdmin and the record indeed had permalink set to / there. Other posts had normal permalinks. So it seems that the database was messed up by something.

The actual WordPress post does not have a custom permalink. However, if I set one and remove it — the record in the database is refreshed, the permalink in wp_yoast_indexable is no longer /, and the canonical is as expected.

Do you have an idea what could have possibly set the permalinks to /?

1 Answer 1


I noticed that all problematic posts had their wp_yoast_indexable row updated a few months ago which exactly matched with when I ran a script to update all existing posts. It was something like this:

$posts = get_posts($args);

foreach ($posts as $i => $post) {
    $post_data = array(
        'ID' => $post->ID,
        // other stuff


The problem was that I ran the script from the CLI, where $_SERVER['HTTP_HOST'] is not set.

Apparently, when you run wp_update_post(), Yoast SEO runs and updates its own tables. If HTTP_HOST is missing, the updated permalink turns to something like http:///the-post-slug/. That's what I saw in the debugger. My guess is that it gets sanitized at some point and finally turns to /.

To fix this, all I had to do was to run an empty wp_update_post() on all problematic posts while HTTP_HOST is set:


$_SERVER['HTTP_HOST'] = 'example.com';

require '/opt/bitnami/wordpress/wp-load.php';

global $wpdb;

$query = <<<SQL
SELECT object_id
FROM wp_yoast_indexable
WHERE permalink='/';

$result = $wpdb->get_results($query, ARRAY_A);
$ids = array_column($result, 'object_id');

foreach ($ids as $id) {
    wp_update_post(['ID' => $id]);

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