Wordpress has excellent tools to handle scripts dependencies and you should use it. You can start with:
In general, it is not recomended to load an external jQuery, but if you really want to do it, you have to deregister the jQuery copy from WP core and then register your own copy or from CDN:
add_action('wp_enqueue_scripts', 'wpse_scripts');
function wpse_scripts() {
//Uncomment the next two lines if you want to load jquery from Google CDN
//wp_deregister_script('jquery');
//wp_register_script( 'jquery', '//ajax.googleapis.com/ajax/libs/jquery/1.11.0/jquery.min.js', false );
//Pajinate depends on jquery
wp_register_script( 'pajinate', $plugins_url."/mistral/js/jquery.pajinate.js", array('jquery') );
//In the next file include your functions and code that depends on jquery and pajinate
wp_register_script( 'my-script', $plugins_url."/mistral/js/your-script.js", array('jquery', 'pajinate') );
//Now you are ready to load enqeue the registered scripts
wp_enqueue_script('jquery');
wp_enqueue_script('pajinate');
wp_enqueue_script('my-script');
}