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I manually updated multisite locally with 3.5.1 but now all my subsisites in "My Sites" link to the root site even though if I type the domains directly they work.

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Please, add debug information to your Question (edit) and check this troubleshoot steps. –  brasofilo Feb 1 '13 at 12:11
Could you try visiting /wp-admin/network/upgrade.php and press the "update network" button? This should update all database tables from all sites instead of just the main site. I hope that helps! –  WPMU-DEV Ari Apr 18 '13 at 14:45
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closed as off-topic by kaiser, G. M., toscho Sep 12 '13 at 7:58

This question appears to be off-topic. The users who voted to close gave this specific reason:

  • "Questions that are too localized (such as syntax errors, code with restricted access, hacked sites, hosting or support issues) are not in scope. See how do I ask a good question?" – kaiser, G. M., toscho
If this question can be reworded to fit the rules in the help center, please edit the question.